Implementation Assignment 3 Solution

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General instructions.

  1. 1. The following languages are acceptable: Java, C/C++, Matlab, Python and
  2. 2. You can work in a team of up to 3 peo Each  team will only need to submit  one copy of the source code and report. You need to explicitly state each member’s contribution in percentages, i.e., for each group member  provide  a number  xx% – percentage  of the total pro ject  she/he  is responsible  for.  Note  that all team members  are expected to contribute equally to the assignment. The individuals  whose contribution is significantly lower than expectation will receive penalty  to the assignment grade.
  3. 3. Your source code and report will be submitted through the TEACH site

 

https://secure.engr.oregonstate.edu:8000/teach.php?type=want_auth

 

Please clearly indicate your team members’ information.

  1. 4. Be sure to answer all the questions in your report. You will be graded based on your code as well as the report.  In particular, the clarity and quality of the report will  be worth 10 pts.  So please write your report in clear and concise manner.  Clearly label your figures, legends, and tables.
  2. 5. In your report,  the results  should  always be accompanied  by discussions  of the results.   Do the results follow your expectation?  Any surprises?  What kind of explanation can you provide?

 

Decision trees  and Random forest  (total points:  50  + 10  pts)

In this assignment you will implement (1) the decision tree learning  algorithm;  and (2) construction of the

random  forest (using feature Bagging and bootstrapped sampling)  with the modified decision tree learning algorithm  from part (1) as the base learner.  You will test your implementation on the IRIS data sets, which is a tree-class  classification  problem,  with  4 continuous  features.   You will train your  classifiers using  the iris-train.csv file and test on the iris-test.scv file. First 4 columns provide feature values and the last column provides a class label:

 

(a)  sepal length in cm (b)  sepal width in cm (c)  petal length in cm (d)  petal width in cm

(e)  class: Iris Setosa (class 0), Iris Versicolour (class 1), Iris Virginica (class 2). In particular, you need to do the following:

  1. 1. (15 pts) Implement a decision tree learning algorithm.

 

(a)  Implement a decision tree learning algorithm, using the number  of instances at leave node as a stopping condition.  That is, if the number  of examples at a node is less than k, one must stop and turn it into a leave node.  Note that, since the features are continuous, for every node of the tree, you should compute threshold θ that gives you the best information gain.

 

(b)  Please  report the information gain of each threshold and  each feature (recall  that you only need to compute information gain when class label changes)  for the root node.

 

(c)  Report (plot) training and  testing errors  (i.e.,  the percentage of correctly classified examples)  versus parameter k.

 

(d)  What effect does k has on training and testing accuracy  of the tree?

 

  1. 2. (35 pts) Implement random  forest  by constructing  an ensemble  of decision trees.  In particular  you should do the following:

 

 

(a)  Modify tree learning algorithm  (from part 1) such that, at each candidate split in the learning process, it selects a random  subset of the features (please  select 2 random  features out of 4).  This  process is sometimes called ”feature bagging”.

 

(b)  Then,  using modified learning algorithm, build a tree on a randomly  (with  replacement) drawn subset of your  training data (the size of each  of such  randomly  drawn  subset is equal  to the size of your original training data). This technique is called ”bootstrap aggregating” or ”bagging”.

 

(c)  Repeat  this  procedure  L times  (thus, you will have L decision trees).  Please,  consider  the following values of L: 5, 10, 15, 20, 25 and 30. Note that prediction for any samples can be made by outputting the class that is the mode of the classes predicted by each of L trees (i.e., ma jority  vote).

 

(d)  For every value of L (5, 10, 15, 20, 25 and 30) plot the training and testing errors (i.e., the percentage of correctly classified examples)  versus values  of the parameter k.  Note that for bagging,  due to its stochastic nature, different  random  runs  may lead to different  results.   To increase  the robustness  of the results,  please  show the average  error  rates over 10 random  runs.   Your  plots should  be clearly labeled with easy-to-read legends.

 

(e)  What trend do you observe in terms of the accuracy  on the training and  testing data respectively as we increase the number  of trees in the ensemble?  How random  feature selection affects the accuracy of classification?  What effect does k has on training and testing accuracy?

 

Note, you need to submit your source code of your implementations and your report.

Do  not forget to include group members and indicate pro ject contribution for each member in percentages.


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